Abstract
Since the end of the glacial age, Picea koyamae has been sparsely distributed in Japan as a relict species and is presently threatened with extinction. We investigated the population structure and genetic structure of nine populations of P. koyamae. Population size was assessed at 9–135 individuals in habitats ranging from 0.5 to 11.5 ha, and seedlings and saplings were observed in all but one particular population, which had a Sasa-type (bamboo grass) forest floor. The effective number of alleles per locus (N e) within peripheral populations in the Yatsugatake Mountains was 1.8–2.7, much lower than that of core populations in the Akaishi Mountains (2.8–4.3) using five nuclear simple sequence repeat loci. This finding suggests that genetic variation in these populations has been reduced by isolation from other populations. The standardized genetic differentiation among populations (G′ st ) was 0.410 and higher than that found in other Japanese conifers, suggesting that isolation and inbreeding have progressed in this species. In two isolated populations at the Yatsugatake Mountains, the fixation index (F is ) was 0.315–0.354, much higher than the values determined for the other populations (−0.188 to 0.263). This suggests that these two populations have survived several generations while increasing the degree of inbreeding. However, the highest seedling density was in a population with low genetic variation and high F is . The most serious problems at present appear to be the declining number of mature trees and the deterioration of suitable environments for seedling establishment.
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References
Aizawa M, Yoshimaru H, Katsuki T, Kaji M (2008) Imprint of postglacial history of a narrow endemic spruce Picea alcoquiana observed in nuclear microsatellite and organelle DNA markers in central Japan. J Biogeogr 35:1295–1307
Aizawa M, Yoshimaru H, Sato H, Katsuki T, Kawahara T, Kitamura K, Shi F, Sabirov R, Kaji M (2009) Range-wide genetic structure in a north-east Asian spruce (Picea jezoensis) determined using nuclear microsatellite markers. J Biogeogr 36:996–1007
Akashi K (2006) Microtopography, debris flow deposits and forest vegetation on the floodplains in the upper stream of the Todai River, northwestern Akaishi Mountains. Nat Hist Rep Inadani 7:33–78 (in Japanese)
Colas B, Chris D, Thomasm D, Hanski I (2004) Adaptive responses to landscape disturbances: empirical evidence. In: Ferrière R, Dieckmann U, Couvet D (eds) Evolutionary conservations biology. Cambridge University Press, Cambridge, pp 284–304
Environmental Agency of Japan (2000) Threatened wildlife of Japan. Red data book 2nd edn. vol 8, Vascular plants, Japan Wildlife Research Center, Tokyo (in Japanese)
Evanno G, Regnaut S, Goudet J (2005) Detecting the number of clusters of individuals using the software structure: a simulation study. Mol Ecol 14:2611–2620
Falush D, Stephens M, Pritchard JK (2007) Inference of population structure using multilocus genotype data: dominant markers and null alleles. Mol Ecol Notes 7:574–578
Farjon A (1990) Pinaceae. Koeltz, Konigstein
Farjon A, Page CN (eds) (1999) Conifers. Status survey and conservation action plan. IUCN, Gland
Flores-Lopéz C, Lopéz-Upton J, Vargas-Hernández JJ (2005) Reproductive indicators in natural populations of Picea mexicana Martínez. Agrociencia 39:117–126
Frankham R, Kingsolver J (2004) Responses to environmental change: adaptation or extinction. In: Ferrière R, Dieckmann U, Couvet D (eds) Evolutionary conservation biology. Cambridge University Press, Cambridge, pp 85–100
Gamache I, Jaramillo-Correa JP, Payette S, Bousquet J (2003) Diverging patterns of mitochondrial and nuclear DNA diversity in subarctic black spruce: imprint of a founder effect associated with postglacial colonization. Mol Ecol 12:891–901
Gapare WJ, Aitken SN (2005) Strong spatial genetic structure in peripheral but not core populations of Sitka spruce [Picea sitchensis (Bong.) Carr.]. Mol Ecol 14:2659–2667
Gapare WJ, Aitken SN, Ritland CE (2005) Genetic diversity of core and peripheral Sitka spruce (Picea sitchensis (Bong.) Carr) populations: implications for conservation of widespread species. Biol Conserv 123:113–123
Goudet J (2001) FSTAT, a program to estimate and test gene diversities and fixation indices, version 2.9.3. http://www2.unil.ch/popgen/softwares/fstat.htm
Hamrick JL, Godt MJW (1990) Allozyme diversity in plant species. In: Brown AHD, Clegg MT, Kahler AL, Weir BS (eds) Plant population genetics, breeding and genetic resources. Sinauer, Sunderland, pp 43–63
Hayashi Y (1960) Notes on Japanese trees and shrubs (4). Bull Gov For Exp Stn 125:71–74
Hedrick PW (2005) A standardized genetic differentiation measure. Evolution 59:1633–1638
Hodgetts RB, Aleksiuk MA, Brown A, Clarke C, Macdonald E, Nadeem S, Khasa D (2001) Development of microsatellite markers for white spruce (Picea glauca) and related species. Theor Appl Genet 102:1252–1258
Innes DJ, Ringius GG (1990) Mating system and genetic structure of two populations of white spruce (Picea glauca) in eastern Newfoundland. Can J Bot 68:1661–1666
Jost L (2008) G st and its relatives do not measure differentiation. Mol Ecol 17:4015–4026
Katsuki T, Seido S (1999) Population of Picea koyamae and P. maximowiczii in Hakushu-cho, Yamanashi Prefecture. Trans Kanto Jpn For Soc 50:69–70 (in Japanese)
Katsuki T, Sugaya T, Kitamura K, Takeuchi T, Katsuta M, Yoshimaru H (2004) Geographic distribution and genetic variation of a vulnerable conifer species, Picea koyamae (Pinaceae). Acta Phytotaxon Geobot 55:19–28
Katsuki T, Aizawa M, Akashi K, Shimada Ke, Shimada Ka (2005) Present conditions of Picea koyamae and P. maximowiczii in Ohshika Village, Nagano Prefecture. Two threatened plant species at the southern limit of distribution. Nat Hist Rep Inadani 6:71–76 (in Japanese)
Katsuki T, Akashi K, Tanaka S, Iwamoto K, Tanaka N (2008) An estimation of the present distribution of Picea koyamae and P. maximowiczii using climatic and geological factors. Jpn J For Environ 50:25–34 (in Japanese)
Kimura M, Crow JF (1964) The number of alleles that can be maintained in a finite population. Genetics 49:725–738
Kobayashi K, Yoshikawa J, Suzuki M (2000) DNA identification of Picea species of the last glacial age in northern Japan. Jpn J Hist Bot 8:67–80
Ledig FT, Jacob-Cervantes V, Hodgskiss PD, Eguiluz-Piedra T (1997) Recent evolution and divergence among populations of a rare Mexican endemic, Chihuahua spruce, following Holocene climatic warming. Evolution 51:1815–1827
Ledig FT, Bermejo-Velázquez B, Hodgskiss PD, Johnson DR, Flores-López C, Jacob-Cervantes V (2000) The mating system and genic diversity in Martínez spruce, an extremely rare endemic of México’s Sierra Madre Oriental: an example of facultative selfing and survival in interglacial refugia. Can J For Res 30:1156–1164
Ledig FT, Hodgskiss PD, Johnson DR (2005) Genic diversity, genetic structure, and mating system of Brewer spruce (Pinaceae), a relict of the Arcto-Tertiary forest. Am J Bot 92:1975–1986
Luo J, Wang Y, Korpelainen H, Li C (2005) Allozyme variation in natural populations of Picea asperata. Silva Fenn 39:167–176
Mantel N (1967) The detection of disease clustering and a generalized regression approach. Cancer Res 27:209–220
Matsumoto A, Uchida K, Taguchi Y, Tani N, Tsumura Y (2010) Genetic diversity and structure of natural fragmented Chamaecyparis obtusa populations as revealed by microsatellite markers. J Plant Res. doi:10.1007/s10265-009-0299-4
Minaki M (1987) Fossil plants of the last glacial age and their evolutional significance. Iden 41(12):30–35 (in Japanese)
Mosseler A, Major JE, Rajora OP (2003) Old-growth red spruce forests as reservoirs of genetic diversity and reproductive fitness. Theor Appl Genet 106:931–937
Nei M, Chesser RK (1983) Estimation of fixation indices and gene diversities. Ann Hum Genet 47:253–259
Newman D, Pilson D (1997) Increased probability of extinction due to decreased genetic effective population size: experimental populations of Clarkia pulchella. Evolution 51:354–362
O’Connell LM, Mosseler A, Rajora OP (2006) Impacts of forest fragmentation on the reproductive success of white spruce (Picea glauca). Can J Bot 84:956–965
Perry DJ, Bousquet J (2001) Genetic diversity and mating system of post-fire and post-harvest black spruce: an investigation using codominant sequence-tagged-site (STS) markers. Can J For Res 31:32–40
Pfeiffer A, Olivieri AM, Morgante M (1997) Identification and characterization of microsatellites in Norway spruce (Picea abies). Genome 40:411–419
Piry S, Luikart G, Cornuet J-M (1999) BOTTLENECK: a computer program for detecting recent reductions in the effective population size using allele frequency data. J Hered 90:502–503
Rajora OP, Mosseler A, Major J (2000) Indicators of population viability in red spruce, Picea rubens. II. Genetic diversity, population structure, and mating behavior. Can J Bot 78:941–956
Rajora OP, Rahman MH, Dayanandan S, Mosseler A (2001) Isolation, characterization, inheritance and linkage of microsatellite DNA markers in white spruce (Picea glauca) and their usefulness in other spruce species. Mol Gen Genet 264:871–882
Rajora OP, Mann IK, Shi Y-Z (2005) Genetic diversity and population structure of boreal white spruce (Picea glauca) in pristine conifer-dominated and mixedwood forest stands. Can J Bot 83:1096–1105
Ran JH, Wei XX, Wang XQ (2006) Molecular phylogeny and biogeography of Picea (Pinaceae): implications for phylogeographical studies using cytoplasmic haplotypes. Mol Phylogenet Evol 41:405–419
Schmidt PA (1989) Beitrag zur Systematik und Evolution der Gattung Picea A, Dietr. Flora 182:435–461
Shimizu T (1992) Taxonomy and phytogeography of conifers, with special reference to some subalpine genera (2). The genus Picea. Jpn J Hist Bot 9:3–11 (in Japanese)
Shirasawa Y, Koyama M (1913) Some new species of Picea and Abies in Japan. Bot Mag Tokyo 27:127–131 (in Japanese)
Sigurgeirsson A, Szmidt AE (1993) Phylogenetic and biogeographic implications of chloroplast DNA variation in Picea. Nord J Bot 13:233–246
Slatkin M (1995) A measure of population subdivision based on microsatellite allele frequency. Genetics 139:457–462
Sorensen FC (1999) Relationship between self-fertility, allocation of growth, and inbreeding depression in three coniferous species. Evolution 53:417–425
Suyama Y, Tsumura Y, Ohba K (1997) A cline of allozyme variation in Abies mariesii. J Plant Res 110:219–226
Takahashi T, Tani N, Taira H, Tsumura Y (2005) Microsatellite markers reveal high variation in natural populations of Cryptomeria japonica near refugial areas of the last glacial period. J Plant Res 118:83–90
Tani N, Tomaru N, Araki M, Ohba K (1996) Genetic diversity and differentiation in populations of Japanese stone pine (Pinus pumila) in Japan. Can J For Res 26:1454–1462
Tomaru N, Tsumura Y, Ohba K (1994) Genetic variation and population differentiation in natural populations of Cryptomeria japonica. Plant Species Biol 9:191–199
Uchida K, Tomaru N, Tomaru C, Yamamoto C, Ohba K (1997) Allozyme variation in natural population of hinoki, Chamaecyparis obtusa (Sieb. et Zucc.) Endl, and its comparison with the plus-tree selected from artificial stands. Breed Sci 47:7–14
Wilson EH (1916) The conifers and taxads of Japan. Cambridge University Press, Cambridge
Wright S (1951) The genetical structure of population. Ann Eugen 15:323–354
Yamazaki T (1995) Pinaceae. In: Iwatsuki K, Yamazaki T, Boufford DE, Ohba H (eds) Flora of Japan. Pteridophyta and Gymnospermae, vol 1. Kodansha, Tokyo, pp 266–277
Acknowledgments
We gratefully acknowledge Prof. C. Campbell (University of Maine) for valuable input; K. Kitamura, Y. Tsumura, K. Yoshimura (Forestry and Forest Products Research Institute) and T. Sugaya (Tokyo University of Agriculture) for their help in collecting and examining samples; H. Nishikawa, T. Nagaike (Yamanashi Forest Research Institute), S. Tanaka (The Botanical Society of Yamanashi), K. Akashi (Iida City Museum), and K. Bessho and M. Ohnaka (Tama Forest Science Garden, Forestry and Forest Products Research Institute) for their help in collecting and field surveying; and the Chubu Regional Forest Office, Yamanashi Prefecture and Ohshika Village for their permission to conduct the study. This study was supported by funds from the Japanese Ministry of the Environment.
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Katsuki, T., Shimada, K. & Yoshimaru, H. Process to extinction and genetic structure of a threatened Japanese conifer species, Picea koyamae . J For Res 16, 292–301 (2011). https://doi.org/10.1007/s10310-010-0227-4
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DOI: https://doi.org/10.1007/s10310-010-0227-4