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J Ornithol (2010) 151:337–345
DOI 10.1007/s10336-009-0460-9

 ORIGINAL ARTICLE



Circumscription of a monophyletic family for the tapaculos
(Aves: Rhinocryptidae): Psiloramphus in and Melanopareia out
Per G. P. Ericson • Storrs L. Olson •
Martin Irestedt • Herculano Alvarenga          •

          ˚
Jon Fjeldsa




Received: 22 February 2009 / Revised: 3 August 2009 / Accepted: 21 September 2009 / Published online: 14 October 2009
Ó Dt. Ornithologen-Gesellschaft e.V. 2009


Abstract The tapaculos (Rhinocryptidae) are tracheo-                  within the Rhinocryptidae, Melanopareia falls far outside
phone, suboscine birds restricted to South and Central                that clade. A new family is erected for Melanopareia.
America. Most tapaculos share a number of internal and
external characteristics that have been used to define the             Keywords Melanopareia Á Psiloramphus Á
family taxonomically. The genera Melanopareia and                     Rhinocryptidae Á Tapaculos Á Molecular systematics Á
Psiloramphus do not fully fit this pattern and have caused             Taxonomy Á South America
considerable dispute among taxonomists since they were
first described. In this paper we delimit the systematic
boundaries of the tapaculos and assess their generic rela-            Introduction
tionships by analysis of molecular sequence data. The
results show that whereas Psiloramphus is nested well                 The impudently named tapaculos (Rhinocryptidae) are a
                                                                      small group of tracheophone, suboscine passerines whose
                                                                      greatest generic diversity is in southern South America.
                                                                      Most are large-footed, strong-legged ground birds remi-
Communicated by M. Wink.                                              niscent of some of the ground-dwelling antthrushes (For-
                                                                      micariidae), with which they were often associated. The
P. G. P. Ericson (&)
                                                                      family is generally well defined by the presence of oper-
Department of Vertebrate Zoology,
Swedish Museum of Natural History,                                    culate nostrils, a tracheophone syrinx, a somewhat curved
P.O. Box 50007, 10405 Stockholm, Sweden                               humerus, and a four-notched sternum (Ames 1971;
e-mail: per.ericson@nrm.se                                                                               ´
                                                                      Feduccia and Olson 1982; Maurıcio et al. 2008). Thus,
                                                                      Krabbe and Schulenberg (2003), p. 748, considered that the
S. L. Olson
Division of Birds, Department of Vertebrate Zoology,                  ‘‘tapaculos constitute a well-knit group the members of
Smithsonian Institution, National Museum of Natural History,          which are united by several derived characters. Only the
P.O. Box 37012, Washington, DC 20013-7012, USA                        genera Melanopareia and Psiloramphus differ to such a
                                                                      degree that their systematic position as tapaculos could be
M. Irestedt
Molecular Systematics Laboratorium,                                   disputed.’’ Furthermore, the phylogenetic relationships
Swedish Museum of Natural History,                                    within the family Rhinocryptidae are poorly known, par-
P.O. Box 50007, 10405 Stockholm, Sweden                               ticularly regarding the placement of Liosceles and
                                                                      Acropternis, and the large austral species of Pteroptochos
H. Alvarenga
             ´                     ´
Museu de Historia Natural de Taubate,                                 and Scelorchilus.
                                         ´
Rua Juvenal Dias de Carvalho, 111, Taubate,                               The early taxonomic history of the group was ably
SP 12070-640, Brazil                                                  summarized by Sclater (1874). d’Orbigny (1837) first
         ˚
                                                                      erected a family ‘‘Rhinomyidaeae’’ (sic., p. 192) for Pter-
J. Fjeldsa
Zoological Museum, University of Copenhagen,                          optochos and his Rhinomya (= Rhinocrypta) using the
Universitetsparken 15, 2100 Copenhagen, Denmark                       operculate nostril to separate them from the Formicariidae.


                                                                                                                        123
338                                                                                                     J Ornithol (2010) 151:337–345


However, there was no coherent understanding of the su-
boscine groups until their distinction from the oscines was
                                            ¨
established by the pioneering work of Muller (1847) on the
            ¨
syrinx. Muller showed that Scytalopus was a tracheophone
suboscine and not a wren (Troglodytidae) and also that
Scytalopus and Pteroptochus differed from other known
passerines in having a four-notched sternum.
   Sclater’s (1874) ‘‘Pteroptochidae’’ comprised Scytal-
opus (including the type species of what later became
Myornis Chapman 1915), Merulaxis, Liosceles, Pteropto-
chos (including the type species of what later became
Teledromas Wetmore and Peters 1922, and Scelorchilus
Oberholser 1923), Rhinocrypta, Hylactes (now included in
Pteroptochos), Acropternis, and Triptorhinus (= Eugralla).
Except for the problem genera Psiloramphus and Mela-
nopareia, this composition of the group was essentially
maintained until Peters (1951).
   The three or four species of Melanopareia differ from
other tapaculos by their rather slender build and boldly and
attractively patterned plumage, and by sharing a semi-
concealed white dorsal patch with various true antbirds
(Thamnophilidae). They were originally described in the
genus Synallaxis (Furnariidae), in which Sclater (1890)
later submerged the genus. Salvin (1876) described a new
species from Ecuador as Formicivora speciosa, duly rec-
ognized in that combination by Sclater (1890), p. 251, and         Fig. 1 The bamboo-wren Psilorhamphus guttatus bears little external
                                                                   resemblance to typical members of the tapaculo family. With its grey
others until Hellmayr (1906), p. 334, showed that this was a       iris, facial expression, bill shape, and wing-coverts with white dots
synonym of Synallaxis elegans Lesson, in which genus               Psilorhamphus instead resembles some antbirds (Dysithamnus, Myr-
Hellmayr continued to place it while regarding Salvin’s            motherula) with which early ornithologists consequently placed it.
allocation of it to Formicivora with incredulity. Ridgway          Unlike other tapaculos Psilorhamphus spends most of the time above
                                                                   the ground. Photo: Edson Endrigo
(1909) seems to have overlooked this when he created a
new genus Rhoporchilis for Formicivora speciosa. It was
Hellmayr (1921) who eventually established the modern              comment that these genera ‘‘might perhaps be more natu-
concept of the genus in showing that Synallaxis elegans, S.        rally placed as a distinct subfamily of Pteroptochidae
torquata, and S. maximiliani were congeneric and would             [= Rhinocryptidae]’’ despite the fact that ‘‘there is little
all fall under Reichenbach’s earlier generic name Mela-            external difference between the appearance of these birds
nopareia and ‘‘find their natural place in the Formicarii-          and the true Wrens [Troglodytidae]’’. We are not aware,
dae’’, where they stayed for only a few years (Cory and            however, of any instance in which Psilorhamphus was
Hellmayr 1924). Next came the observation of W.D.W.                placed in either the Troglodytidae or in a family with only
Miller that the sternum of Melanopareia was four-not-              sylviid-like genera, as might be inferred from Krabbe and
ched—information that was conveyed to and presented by             Schulenberg (2003). Psilorhamphus continued to be asso-
Wetmore (1926), p. 292. On this basis, Peters (1951)               ciated with Ramphocaenus in the Formicariidae—e.g.
included Melanopareia in the Rhinocryptidae, where it has          Sclater (1890) and Cory and Hellmayr (1924), p. 205—
resided since.                                                     although in the latter reference it was noted that W.D.W.
   The other problem species, the Bamboo-wren Psilor-              Miller would show Psilorhamphus and Ramphocaenus to
hamphus guttatus, is a small bamboo specialist with a              ‘‘constitute a separate family’’ in ‘‘a paper shortly to be
rather long, slender bill, a long tail, and relatively weak        published.’’ Peters (1951), p. 213, later explained that
feet, so it bears little resemblance to large-footed terrestrial   Miller’s death prevented publication of his results but that
                                              ´ ´ ´
tapaculos (Fig. 1). From the beginning (Menetries 1835) it         Wetmore (1943), p. 306, had shown Ramphocaenus to
was placed with the antbirds in the Myiotherinae (= For-           have an oscine syrinx, and had told Peters that Microbates
micariidae). Sclater (1858), p. 243, associated Psilorham-         likewise was oscine and that he believed, on the basis of
phus with Ramphocaenus (which is now in the oscine                 external morphology, that Psilorhamphus was also proba-
family Polioptilidae) in the Formicariidae with the                bly oscine. Therefore, Peters postponed his treatment of


123
J Ornithol (2010) 151:337–345                                                                                              339


those genera for a future volume treating Sylviidae. Sick         1994; Krabbe and Schulenberg 2003), including represen-
(1954) placed Ramphocaenus in the Sylviidae while pro-            tatives of the large genus Scytalopus, including one rep-
visionally referring Psilorhamphus to the Formicariidae.          resentative (indigoticus) of the ‘‘blue’’ species, which were
          ´
Then, Plotnick (1958) revealed that Psilorhamphus had a           recently placed in a separate genus Eleoscytalopus
four-notched sternum, a tracheophone syrinx, and had other               ´
                                                                  (Maurıcio et al. 2008). Three of the authors have significant
characters, including an operculate nostril, indicating that it   field experience of the biology and vocalizations of
should be placed in the Rhinocryptidae. Thus, in Peters’          tapaculos, and this was supplemented with comments and
Checklist Psilorhamphus appears as an addendum to the             analyses of sound archives by Niels Krabbe (personal
Rhinocryptidae that appeared in the volume on Sylviidae           communication). Representatives of the main lineages
(Paynter 1964).                                                   within the tracheophone radiation serve as outgroups
   Heimerdinger and Ames (1967) confirmed that the rhi-            (Ridgely and Tudor 1994; Irestedt et al. 2002; Krabbe and
nocryptids they examined all had a four-notched sternum           Schulenberg 2003; Chesser 2004).
but also showed that this condition obtained in at least two         Three nuclear gene regions, myoglobin intron 2, orni-
genera of grallarine Formicariidae, which was confirmed            thine decarboxylase (ODC) introns 6 to 7, and glycer-
by Feduccia and Olson (1982).                                     aldehyde-3-phosphodehydrogenase (G3PDH) intron 11,
   Ames (1971) made a thorough study of the anatomy of            were sequenced and used to estimate phylogenetic rela-
the syrinx in passerine birds and examined Melanopareia           tionships. For each gene and taxon, multiple sequence
first-hand but had to rely on the description of Plotnick´         fragments were obtained by sequencing with different
(1958) for Psilorhamphus. Although he noted that the              primers. These sequences were assembled to complete
cartilaginous elements of Melanopareia differed from              sequences with SEQMAN II (DNASTAR). Positions where
those of all other tapaculos examined, he found no grounds        the nucleotide could not be determined with certainty were
for excluding either Melanopareia or Psilorhamphus from           coded with the appropriate IUPAC code. GenBank acces-
the Rhinocryptidae.                                               sion numbers are given in Table 1. See Irestedt et al.
   Feduccia and Olson (1982) made the much unexpected                                                             ˚
                                                                  (2002); Allen and Omland (2003); and Fjeldsa et al. (2003)
discovery that the stapes in Melanopareia was of the              for extractions, amplifications, and sequencing procedures
primitive oscine type with a flattened footplate, rather than      for fresh tissue/blood samples. Corresponding laboratory
having an expanded, bulbous, fenestrate footplate as in all       procedures for study skins are detailed in Irestedt et al.
other suboscine birds. They went on to show other mor-            (2006).
phological similarities (which is all they ever claimed they
were) between some of the Rhinocryptidae and the oscine           Phylogenetic inference and model selection
Menurae (Menura and Atrichornis) of Australia. Although
this observation was dismissed on the grounds that the            Because of the rather low number of insertions in the
characters involved are either primitive or convergent            introns, the combined sequences could easily be aligned by
(Krabbe and Schulenberg 2003), the fact remains that the          eye. All gaps have been treated as missing data in the
oscines and suboscines had to share a common ancestor             analyses. Bayesian inference (Holder and Lewis 2003;
and that the ancestor was very likely to have looked like         Huelsenbeck et al. 2001) was used to estimate the phylo-
Atrichornis, Melanopareia, or one of the Rhinocryptidae,          genetic relationships. The models for nucleotide substitu-
for example Scelorchilus.                                         tions used in the analyses were selected for each gene
   This paper aims to delimit the boundaries of the tapac-        individually by applying the Akaike information criterion
ulos and assess generic relationships within the group,           (AIC; Akaike 1973) and the software MrModeltest 2.2
supplementing the very detailed ongoing studies of rela-          (Nylander 2005) in conjunction with PAUP* (Swofford
tionships and speciation of small tapaculos (notably Scy-         1998).
               ´
talopus; Maurıcio et al. 2008, Cadena et al. unpublished)            Posterior probabilities of trees and parameters in the
by providing a broader phylogenetic framework for the             substitution models were approximated with MCMC and
family.                                                           Metropolis coupling using the software MrBayes 3.1.1
                                                                  (Ronquist and Huelsenbeck 2003). Analyses were per-
                                                                  formed for both the individual gene partitions and the
Materials and methods                                             combined data set. In the analysis of the combined data set,
                                                                  the models selected for the individual gene partition were
Taxon sampling, amplification and sequencing                       used. The chains for the individual gene partitions were run
                                                                  for five million generations while the chains for the com-
This study includes representatives of all genera tradi-          bined data set were run for ten million generations. Trees
tionally recognized in Rhinocryptidae (Ridgely and Tudor          were sampled every 100th generation, and the trees


                                                                                                                    123
340                                                                                                                      J Ornithol (2010) 151:337–345


Table 1 Specimen data and GenBank accession numbers for samples used in the study
Species                               Family: Subfamily                     Voucher/Sample No.          Myoglobin           G3PDH              ODC

Acropternis orthonyx                  Rhinocryptidae                        ZMUC 125695*                GQ925894            GQ925879           GQ925860
Merulaxis ater                        Rhinocryptidae                        ZMUC 128820                 GQ925895            GQ925880           GQ925861
Pteroptochos tarnii                   Rhinocryptidae                        AMNH RTC467*                AY065774a           AY590096e          GQ925862
Rhinocrypta lanceolata                Rhinocryptidae                        NRM 966793                  AY065775a           DQ438953f          DQ435499f
Teledromas fuscus                     Rhinocryptidae                        USNM BKS3703*               GQ925896            GQ925881           GQ925863
Psilorhamphus guttatus                Rhinocryptidae                        MHNT-4812                   GQ925897            GQ925882           GQ925864
Myornis senilis                       Rhinocryptidae                        ZMUC 134967*                GQ925898            GQ925883           GQ925865
Scytalopus parvirostris               Rhinocryptidae                        ZMUC 128441                 GQ925899            GQ925884           GQ925866
Scytalopus speluncae                  Rhinocryptidae                        ZMUC 128818                 GQ925900            GQ925885           GQ925867
Scytalopus spillmannii                Rhinocryptidae                        ZMUC 125091*                AY065773a           AY590097e          GQ925868
Scytalopus zimmeri                    Rhinocryptidae                        ZMUC 126278*                GQ925901            GQ925886           GQ925869
Scytalopus superciliaris              Rhinocryptidae                        USNM BKS 3592*              GQ925902            GQ925887           GQ925870
Eugralla paradoxa                     Rhinocryptidae                        NRM 570026*, TP             GQ925903            GQ925888           GQ925871
Scelorchilus rubecula                 Rhinocryptidae                        NRM 570029*, TP             GQ925904            GQ925889           GQ925872
Liosceles thoracicus                  Rhinocryptidae                        NRM 570027*, TP             GQ925905            GQ925890           GQ925873
Eleoscytalopus indigoticus            Rhinocryptidae                        NRM 570028*, TP             GQ925906            GQ925891           GQ925874
Melanopareia maximiliani              Rhinocryptidae                        ZMUC 125045*                AY065785a           GQ925892           GQ925875
Furnarius cristatus                   Furnariidae: Furnariinae              NRM 966772*                 AY064255b           AY590066e          DQ435482f
                                                                                                                    a                  e
Philydor atricapillus                 Furnariidae: Furnariinae              NRM 937334*                 AY065758            AY590076           EF212110h
                                                                                                                    a                  e
Synallaxis ruficapilla                 Furnariidae: Furnariinae              NRM 956643*                 AY065763            AY590068           EF212119h
                                                                                                                    a                  g
Lepidocolaptes angoustirostris        Furnariidae: Dendrocolaptinae         NRM 937184*                 AY065767            AY336576           DQ435486f
                                                                                                                    c                  e
Dendrocincla tyrannina                Furnariidae: Dendrocolaptinae         ZMUC 125661*                AY442959            AY590087           EF212098h
                                                                                                                    a                  e
Chamaeza meruloides                   Formicariidae                         ZMUC 126604*                AY065776            AY590095           GQ140036i
                                                                                                                    a
Formicarius nigricapillus             Formicariidae                         ZMUC 125987*                AY065777            GQ925893           GQ925876
Grallaria squamigera                  Grallariidae                          ZMUC 124629*                AY065778a           AY677078c          GQ140073i
Dysithamnus mentalis                  Thamnophilidae                        NRM 956629*                 AY676995c           AY677042c          GQ925877
Terenura humeralis                    Thamnophilidae                        FMNH 389941                 AY677004c           AY677051c          GQ925878
Thamnophilus caerulescens             Thamnophilidae                        NRM 967007*                 AY065783a           AY336587g          DQ435504f
                                                                                                                    a
Conopophaga aurita                    Conopophagidae                        ZMUC 125796*                AY065784                               DQ435478f
                                                                                                                                       g
Conopophaga lineata                   Conopophagidae                        NRM 956653*                                     AY336577
Pipra fasciicauda                     Pipridae                              NRM 947271*                 AY065787a           AY336583g          DQ435495f
                                                                                                                    a                  f
Corythopsis delalandi                 Tyrannidae                            NRM 937282*                 AY065788            DQ435463           DQ435479f
                                                                                                                    d                  f
Elaenia flavogaster                    Tyrannidae                            NRM 966970*                 AY228295            DQ435464           DQ435480f

Samples vouchered with a study skin are indicated by an asterisk. ‘‘TP’’ indicates that the sample is obtained from toe-pads of an old study skin. Acronyms
are AMNH, American Museum of Natural History; FMNH, Field Museum of Natural History, Chicago, USA; MHNT, Museu de Historia Natural de        ´
      ´
Taubate, Sao Paulo, Brazil; NRM, Swedish Museum of Natural History; USNM, National Museum of Natural History, Washington, USA; ZMUC
Zoological Museum, University of Copenhagen, Denmark
a
    Irestedt et al. (2002)
b
    Ericson et al. (2002)
c
    Irestedt et al. (2004)
d
    Ericson and Johansson (2003)
e
          ˚
    Fjeldsa et al. (2005)
f
    Ericson et al. (2006)
g
          ˚
    Fjeldsa et al. (2003)
h
          ˚
    Fjeldsa et al. (2007)
i
    Irestedt et al. (in press)


sampled during the burn-in phase (i.e., before the chain had                    Sequence lengths and alignments
reached its apparent target distribution) were then dis-
carded after checking for convergence; final inference was                       We were able to sequence all three gene regions almost
made from the concatenated outputs.                                             completely for all included taxa (a few sequences miss


123
J Ornithol (2010) 151:337–345                                                                                             341


some base pairs in the 30 or 50 ends in the myoglobin or the    contains Formicariidae sensu stricto and Furnariidae, in
ODC regions, and in the ODC region all sequences                agreement with previous molecular studies of tracheo-
obtained from study skins lack a short fragment of 22 bp in     phone suboscines (Irestedt et al. 2002; Chesser 2004).
exon 7). Taking into account the missing base pairs, the           Within the radiation of tapaculos there is also good
sequences obtained varied in length between 667 and             support for two major clades. Clade 1 includes Teledromas,
701 bp for the myoglobin intron 2, and between 313 and          Acropternis, Rhinocrypta, Liosceles, and Psilorhamphus
363 bp for the G3PDH intron 11, except for the two ant-         and Clade 2 includes Scytalopus, Eugralla, Myornis,
thrushes Chamaeza and Formicarius which contain two             Merulaxis, and Eleoscytalopus. The only conflict within
large deletions in the G3PDH intron 11 which makes these        the rhinocryptid radiation supported by posterior proba-
sequences 251–252 bp long. In the ODC region all Rhi-           bilities above 0.95 involves determining to which of the
nocryptidae and Furnariidae taxa have a large deletion in       previous two clades Pteroptochos and Scelorchilus belong.
intron 7 and the sequences from these taxa range between        In the ODC tree they group with Clade 1 (0.97), whereas
403 and 500 bp, while the sequences for all other taxa          the myoglobin tree indicates that these two taxa are sister
range between 586 and 624 bp.                                   to Clade 2 (1.00). In the G3PDH tree this relationship is
   Most indels observed in the introns were autapomorphic       unresolved. On the basis of the overall congruence of the
and mainly found in certain variable regions. Some indels       individual gene trees we believe that the tree obtained from
vary in length between taxa, which makes it difficult to         the combined analysis (Fig. 2) represents the best estimate
know if these indels are homologous or represent inde-          of the phylogenetic relationship of the tapaculos and in this
pendent evolutionary events. Several apparently synapo-         Pteroptochos and Scelorchilus fall out as sister to Clade 2.
morphic indels were also observed when mapping the data         This tree is fully congruent with the results of studies using
on to the tree topology obtained from the Bayesian anal-        other genetic markers, but with focus on detailed rela-
yses of the combined data set. A few indels were also found                                      ´
                                                                tionships within Clade 2 (Maurıcio et al. 2008 and Cadena
to be incongruent with the phylogenetic tree obtained from      et al. unpublished).
analysis of the combined data set. These were generally
found in the most variable regions and some of the single
base pair insertions actually consist of different bases.       Discussion

Models for nucleotide substitutions                             Melanopareia resembles members of the Rhinocryptidae in
                                                                having the lacrimal bones partly fused with the ectethmoid
The prior selection of nucleotide substitution models sug-      (but the lacrimals are lacking in Conopophagidae, Tham-
gested that the GTR ? C model had the best fit for all three     nophilidae, Grallaridae, and Formicariidae) and in having a
gene regions, but as the nucleotide state frequencies and       four-notched sternum. The significance of these characters
gamma distribution differed between the partitions we           is uncertain because of the weak cranial ossification in
applied a partitioned analysis of the combined data set.        these groups and substantial flexibility (including varying
After discarding the burn-in phase the inferences for           degrees of developmental asymmetry) in the degree of
myoglobin and G3PDH were based on a total of 45,000             ossification of the membranes serving as attachment of
samples from the posterior, the inferences for ODC were         pectoral muscles (Heimerdinger and Ames 1967). The
based on a total of 40,000 samples, and the inferences for      molecular data are not suggestive of a close relationship of
the combined data set were based on a total of 95,000           Melanopareia to the Rhinocryptidae. With four closely
samples. The posterior distribution of topologies is pre-       related extant species, Melanopareia is a long, unbroken
sented as a majority-rule consensus tree from the combined      phylogenetic branch, and it may be difficult to tell with
analysis in Fig. 2.                                             confidence whether this clade is nested within the Conop-
                                                                ophagidae–Thamnophilidae complex or is a relictual, basal
                                                                tracheophone type of bird.
Results                                                            Irestedt et al. (2002) associated Teledromas with Mel-
                                                                anopareia primarily because their vocalizations are con-
The trees obtained from the Bayesian analyses of the            fusingly similar, and Teledromas was considered to
individual gene partitions (Fig. 3) are overall topologically   resemble a robust and pale version of Melanopareia. Both
congruent. Melanopareia clusters with Thamnophilidae            genera are reported to share a peculiarity of the pterylog-
and Conopophagidae and we can therefore reject it as a          raphy of the flank region, and details of the nasal opercu-
member of the family Rhinocryptidae with high confi-             lum and tarsal scutellation, and an X-ray photo suggested
dence. Apart from this, all traditional tapaculo genera form    almost straight humeri (approaching those of Melano-
a monophyletic clade within a broader group which also          pareia; Irestedt et al. 2002). However, our DNA data and


                                                                                                                   123
342                                                                                                                               J Ornithol (2010) 151:337–345


                                                                          60                            Acropternis orthonyx
                                                                         94                                        Rhinocrypta lanceolata
                                                                       100                         Teledromas fuscus
                                                                               100                               Liosceles thoracicus
                                                                                                          Psilorhamphus guttatus
                                                                                                   56       Scytalopus parvirostris
                                                                                                              Scytalopus spillmannii
                                                                 100                             100 100         Scytalopus superciliaris
                                                                                           98                  Scytalopus zimmeri
                                                                                                           Scytalopus speluncae
                                                                                         100
                                                                                                    Eugralla paradoxa
                                                                                   100                      Myornis senilis
                                                                                           100                   Merulaxis ater
                                                                       100                                    Eleoscytalopus indigoticus
                                                          100                        100                 Pteroptochos tarnii
                                                                                                         Scelorchilus rubecula
                                                                             100                               Chamaeza meruloides
                                                                                                                     Formicarius nigricapillus
                                                                                    100            Dendrocincla tyrannina
                                                  100
                                                                                                              Lepidocolaptes angustirostri
                                                                             100
                                                                                     100                        Furnarius cristatus
                                                                                   100                      Synallaxis ruficapilla
                                               100                                                        Philydor atricapillus
                                                                                                   Grallaria squamigera
                                                      55                                            Conopophaga aurita
                                                                                                        Melanopareia maximiliani
                                                     91                            100                    Dysithamnus mentalis
                                                                        100                             Thamnophilus caerulescens
                                                                                                  Terenura humeralis
                    99                         Corythopsis delalandi
                                           Elaenia flavogaster
                                           Pipra fasciicauda

Fig. 2 Majority rule consensus tree obtained from Bayesian analyses of the combined data set (myoglobin intron 2, ODC introns 6 and 7, and
G3PDH intron 11). Posterior probability values are indicated at the node

further examination of skeletal characters suggest rejection                       the pace and quality of the song notes of Psilorhamphus are
of a closer relationship between them and places Tele-                             most like the songs of larger species of Pteroptochos,
dromas centrally in Clade 1 of the Rhinocryptidae.                                 which are even lower pitched (0.5–0.6 kHz). Interestingly,
   Psilorhamphus was placed with Polioptiline oscines                              Psilorhamphus shares with Liosceles barred posterior un-
based on the acutiplantar tarsus, but a similar tarsal sca-                        derparts and distinctive whitish subterminal spots with a
lation is also found in some antbirds, and osteology and                           black outline on the middle and greater wing-coverts. Apart
syringeal morphology suggested placement with Rhino-                               from this, it is difficult to see any external features sup-
cryptidae. We were able to confirm from examination of                              porting the suggested relationships within Clade 1.
skeletal specimens that Psilorhamphus—and Teledro-                                    The possible association of the large Chilean tapac-
mas—have the expanded footplate of the stapes typical of                           ulos (Pteroptochos, Scelorchilus) with Clade 2 receives
other suboscines (except Melanopareia).                                            some morphological support, as Pteroptochos has 14
   The distinctive appearance of Psilorhamphus may result                          rectrices, something that is also found in some species
from its divergent habits (albeit shared with Myornis,                             or individuals of Scytalopus, although other representa-
N. Krabbe personal communication), because it generally                            tives of this genus have a reduced number of rectrices or
feeds by climbing in tangles of vine-like bamboo, occa-                            asymmetrical tails (Krabbe and Schulenberg 2003).
sionally up to 7 m, and it rarely feeds on the ground. This                        Other suboscine birds typically have 12 rectrices,
species is also known for its unbelievably loud and low-                           although there are many cases of reduction. Molecular
pitched vocalizations (for its small size, 13.5 cm): a fast                        relationships within Pteroptochos have been analyzed by
series of hollow whistles at 0.9–1 kHz. Its sister taxon in                        Chesser (1999).
Fig. 2, Liosceles, also gives hollow whistles, but they are                           Within Clade 2, the Myornis–Eugralla–Scytalopus
higher pitched (1.3 kHz) and are given at a slower pace;                           group is particularly well defined morphologically by small


123
J Ornithol (2010) 151:337–345                                                                                                                                                                                         343

                                                                             Acropternis orthonyx
  A myoglobin                                 51
                                                                                                                      B ODC                         65
                                                                                                                                                                               Liosceles thoracicus
                                             83                               Teledromas fuscus                                                                      Psilorhamphus guttatus
                                       100                                              Rhinocrypta lanceolata                                                                 Pteroptochos tarnii
                                                                                                                                                               100
                                                 100                          Liosceles thoracicus                                                                            Scelorchilus rubecula
                                                                                                                                               97
                                                                                  Psilorhamphus guttatus                                                 Acropternis orthonyx
                                                                              100          Scytalopus superciliaris                                                    Rhinocrypta lanceolata
                                                                                        Scytalopus zimmeri                                                           Teledromas fuscus

                                100                                        100       Scytalopus parvirostris                                                                   Scytalopus parvirostris
                                                                                                                                                                        97
                                                                                       Scytalopus speluncae                              100                                    Scytalopus spillmannii
                                                                  95
                                                                                       Scytalopus spillmannii                                                        100 97    Scytalopus superciliaris
                                                          100
                                                                             Eugralla paradoxa                                                                                  Scytalopus zimmeri
                                                                                                                                                              88
                                                       100                          Myornis senilis                                                                           Scytalopus speluncae
                                                                                                                                                         96
                                                                                   Merulaxis ater                                                                      Eugralla paradoxa
                                        100                            100
                                                                          Scytalopus indigoticus                                                  100                   Myornis senilis
                                                    100                       Pteroptochos tarnii                                                                             Merulaxis ater
                        100                                                                                                                              89
                                                                             Scelorchilus rubecula                                                                                 Scytalopus indigoticus

                                 100                                   Chamaeza meruloides                                                                                                Chamaeza meruloides
                                                                                                                                                         100
                                                                       Formicarius nigricapillus                                                                                                Formicarius nigricapillus
                                            100                   Dendrocincla tyrannina                                                                              Dendrocincla tyrannina
                   84                                                                                                                                    100
                                                                          Lepidocolaptes angustirostri                                                                              Lepidocolaptes angustirostri
                                      100
                                                84                          Furnarius cristatus                                                   100 100                     Furnarius cristatus
                                             100                            Synallaxis ruficapilla                                                                      Synallaxis ruficapilla
                                                                                                                                  100
                                                                  Philydor atricapillus                                                                                 Philydor atricapillus
                                                  Grallaria squamigera                                                                                                                Dysithamnus mentalis
             100                                                                                                                                                     100
                   60                                         Conopophaga aurita                                                                     100                            Thamnophilus caerulescens
                                                    Melanopareia maximiliani                                                                                                    Terenura humeralis

                                94                       Dysithamnus mentalis                                                                                              Conopophaga aurita
                          100                           Thamnophilus caerulescens                                                                                             Grallaria squamigera
                                                  Terenura humeralis                                                                                                    Melanopareia maximiliani

   96               Corythopsis delalandi                                                                              90               Corythopsis delalandi
                    Elaenia flavogaster                                                                                            Elaenia flavogaster
                   Pipra fasciicauda                                                                                          Pipra fasciicauda



  C G3PDH                                          89                              Acropternis orthonyx
                                              71                                    Rhinocrypta lanceolata

                                            96                     Teledromas fuscus

                                                    100                                Liosceles thoracicus
                                                                            Psilorhamphus guttatus

                                                       62               Myornis senilis
                                                                  Scytalopus parvirostris
                                                                  Scytalopus speluncae
                                                             66
                                                   98                  Scytalopus spillmannii
                                      100                                Scytalopus superciliaris
                                                             100
                                             78                         Scytalopus zimmeri
                                                              Eugralla paradoxa

                                                          100                    Merulaxis ater
                                                                             Scytalopus indigoticus

                                            100               Pteroptochos tarnii
                                                                  Scelorchilus rubecula

                                                              80                   Dysithamnus mentalis

                                 80                     100                       Thamnophilus caerulescens
                                                                            Terenura humeralis
                                      82
                                                                        Conopophaga aurita
                                                                                          Melanopareia maximiliani

                                                             61              Dendrocincla tyrannina

                         100                                                      Lepidocolaptes angustirostri
                                                     100
                                                                   80                   Philydor atricapillus

                                        96                    99                     Synallaxis ruficapilla
                                                                                      Furnarius cristatus
   93
                                                                                  Grallaria squamigera

                                  100                   Chamaeza meruloides
                                                                            Formicarius nigricapillus
              Elaenia flavogaster
                   Pipra fasciicauda
              Corythopsis delalandi


Fig. 3 The majority rule consensus trees obtained from the Bayesian analyses of the individual genes. a myoglobin intron 2; b ornithine
decarboxylase introns 6 to 7; and c glyceraldehyde-3-phosphodehydrogenase intron 11. Posterior probability values are indicated at the node




                                                                                                                                                                                                           123
344                                                                                                    J Ornithol (2010) 151:337–345


size and sooty-grey to blackish plumage and atrophied            Acknowledgments Our thanks go especially to those researchers
clavicles, which do not form a fused furcula (Maurıcio     ´     who, for years, and often with very small economic means, have
                                                                 collected the specimens and tissue samples without which studies like
et al. 2008). This may reflect reduced flying ability of these     this could not be made. N. Krabbe is thanked for comments on the
specialized birds, which tunnel through the densest parts of     manuscript. E. Endrigo kindly provided the photograph of Psilor-
the forest understorey. Myornis bears some resemblance to        hamphus. The following institutions provided samples that have been
Merulaxis, in shape and juvenile plumage (Krabbe and             included in the study: Zoological Museum of Copenhagen University,
                                                                 Swedish Museum of Natural History, National Museum of Natural
Schulenberg 2003), but our result does not support such an       History, American Museum of Natural History and Field Museum of
association. On the other hand, Myiornis and Eugralla            Natural History. The Swedish Research Council provided financial
clearly fall outside the group of species of Scytalopus that     support for the laboratory work (grant no. 621–2007–5280 to PE).
we studied (except with G3PDH) and we therefore support
keeping them in separate monotypic genera.
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Circumscription of a monophyletic family for the tapaculos (aves rhinocryptidae) psiloramphus in and melanopareia out

  • 1. J Ornithol (2010) 151:337–345 DOI 10.1007/s10336-009-0460-9 ORIGINAL ARTICLE Circumscription of a monophyletic family for the tapaculos (Aves: Rhinocryptidae): Psiloramphus in and Melanopareia out Per G. P. Ericson • Storrs L. Olson • Martin Irestedt • Herculano Alvarenga • ˚ Jon Fjeldsa Received: 22 February 2009 / Revised: 3 August 2009 / Accepted: 21 September 2009 / Published online: 14 October 2009 Ó Dt. Ornithologen-Gesellschaft e.V. 2009 Abstract The tapaculos (Rhinocryptidae) are tracheo- within the Rhinocryptidae, Melanopareia falls far outside phone, suboscine birds restricted to South and Central that clade. A new family is erected for Melanopareia. America. Most tapaculos share a number of internal and external characteristics that have been used to define the Keywords Melanopareia Á Psiloramphus Á family taxonomically. The genera Melanopareia and Rhinocryptidae Á Tapaculos Á Molecular systematics Á Psiloramphus do not fully fit this pattern and have caused Taxonomy Á South America considerable dispute among taxonomists since they were first described. In this paper we delimit the systematic boundaries of the tapaculos and assess their generic rela- Introduction tionships by analysis of molecular sequence data. The results show that whereas Psiloramphus is nested well The impudently named tapaculos (Rhinocryptidae) are a small group of tracheophone, suboscine passerines whose greatest generic diversity is in southern South America. Most are large-footed, strong-legged ground birds remi- Communicated by M. Wink. niscent of some of the ground-dwelling antthrushes (For- micariidae), with which they were often associated. The P. G. P. Ericson (&) family is generally well defined by the presence of oper- Department of Vertebrate Zoology, Swedish Museum of Natural History, culate nostrils, a tracheophone syrinx, a somewhat curved P.O. Box 50007, 10405 Stockholm, Sweden humerus, and a four-notched sternum (Ames 1971; e-mail: per.ericson@nrm.se ´ Feduccia and Olson 1982; Maurıcio et al. 2008). Thus, Krabbe and Schulenberg (2003), p. 748, considered that the S. L. Olson Division of Birds, Department of Vertebrate Zoology, ‘‘tapaculos constitute a well-knit group the members of Smithsonian Institution, National Museum of Natural History, which are united by several derived characters. Only the P.O. Box 37012, Washington, DC 20013-7012, USA genera Melanopareia and Psiloramphus differ to such a degree that their systematic position as tapaculos could be M. Irestedt Molecular Systematics Laboratorium, disputed.’’ Furthermore, the phylogenetic relationships Swedish Museum of Natural History, within the family Rhinocryptidae are poorly known, par- P.O. Box 50007, 10405 Stockholm, Sweden ticularly regarding the placement of Liosceles and Acropternis, and the large austral species of Pteroptochos H. Alvarenga ´ ´ Museu de Historia Natural de Taubate, and Scelorchilus. ´ Rua Juvenal Dias de Carvalho, 111, Taubate, The early taxonomic history of the group was ably SP 12070-640, Brazil summarized by Sclater (1874). d’Orbigny (1837) first ˚ erected a family ‘‘Rhinomyidaeae’’ (sic., p. 192) for Pter- J. Fjeldsa Zoological Museum, University of Copenhagen, optochos and his Rhinomya (= Rhinocrypta) using the Universitetsparken 15, 2100 Copenhagen, Denmark operculate nostril to separate them from the Formicariidae. 123
  • 2. 338 J Ornithol (2010) 151:337–345 However, there was no coherent understanding of the su- boscine groups until their distinction from the oscines was ¨ established by the pioneering work of Muller (1847) on the ¨ syrinx. Muller showed that Scytalopus was a tracheophone suboscine and not a wren (Troglodytidae) and also that Scytalopus and Pteroptochus differed from other known passerines in having a four-notched sternum. Sclater’s (1874) ‘‘Pteroptochidae’’ comprised Scytal- opus (including the type species of what later became Myornis Chapman 1915), Merulaxis, Liosceles, Pteropto- chos (including the type species of what later became Teledromas Wetmore and Peters 1922, and Scelorchilus Oberholser 1923), Rhinocrypta, Hylactes (now included in Pteroptochos), Acropternis, and Triptorhinus (= Eugralla). Except for the problem genera Psiloramphus and Mela- nopareia, this composition of the group was essentially maintained until Peters (1951). The three or four species of Melanopareia differ from other tapaculos by their rather slender build and boldly and attractively patterned plumage, and by sharing a semi- concealed white dorsal patch with various true antbirds (Thamnophilidae). They were originally described in the genus Synallaxis (Furnariidae), in which Sclater (1890) later submerged the genus. Salvin (1876) described a new species from Ecuador as Formicivora speciosa, duly rec- ognized in that combination by Sclater (1890), p. 251, and Fig. 1 The bamboo-wren Psilorhamphus guttatus bears little external resemblance to typical members of the tapaculo family. With its grey others until Hellmayr (1906), p. 334, showed that this was a iris, facial expression, bill shape, and wing-coverts with white dots synonym of Synallaxis elegans Lesson, in which genus Psilorhamphus instead resembles some antbirds (Dysithamnus, Myr- Hellmayr continued to place it while regarding Salvin’s motherula) with which early ornithologists consequently placed it. allocation of it to Formicivora with incredulity. Ridgway Unlike other tapaculos Psilorhamphus spends most of the time above the ground. Photo: Edson Endrigo (1909) seems to have overlooked this when he created a new genus Rhoporchilis for Formicivora speciosa. It was Hellmayr (1921) who eventually established the modern comment that these genera ‘‘might perhaps be more natu- concept of the genus in showing that Synallaxis elegans, S. rally placed as a distinct subfamily of Pteroptochidae torquata, and S. maximiliani were congeneric and would [= Rhinocryptidae]’’ despite the fact that ‘‘there is little all fall under Reichenbach’s earlier generic name Mela- external difference between the appearance of these birds nopareia and ‘‘find their natural place in the Formicarii- and the true Wrens [Troglodytidae]’’. We are not aware, dae’’, where they stayed for only a few years (Cory and however, of any instance in which Psilorhamphus was Hellmayr 1924). Next came the observation of W.D.W. placed in either the Troglodytidae or in a family with only Miller that the sternum of Melanopareia was four-not- sylviid-like genera, as might be inferred from Krabbe and ched—information that was conveyed to and presented by Schulenberg (2003). Psilorhamphus continued to be asso- Wetmore (1926), p. 292. On this basis, Peters (1951) ciated with Ramphocaenus in the Formicariidae—e.g. included Melanopareia in the Rhinocryptidae, where it has Sclater (1890) and Cory and Hellmayr (1924), p. 205— resided since. although in the latter reference it was noted that W.D.W. The other problem species, the Bamboo-wren Psilor- Miller would show Psilorhamphus and Ramphocaenus to hamphus guttatus, is a small bamboo specialist with a ‘‘constitute a separate family’’ in ‘‘a paper shortly to be rather long, slender bill, a long tail, and relatively weak published.’’ Peters (1951), p. 213, later explained that feet, so it bears little resemblance to large-footed terrestrial Miller’s death prevented publication of his results but that ´ ´ ´ tapaculos (Fig. 1). From the beginning (Menetries 1835) it Wetmore (1943), p. 306, had shown Ramphocaenus to was placed with the antbirds in the Myiotherinae (= For- have an oscine syrinx, and had told Peters that Microbates micariidae). Sclater (1858), p. 243, associated Psilorham- likewise was oscine and that he believed, on the basis of phus with Ramphocaenus (which is now in the oscine external morphology, that Psilorhamphus was also proba- family Polioptilidae) in the Formicariidae with the bly oscine. Therefore, Peters postponed his treatment of 123
  • 3. J Ornithol (2010) 151:337–345 339 those genera for a future volume treating Sylviidae. Sick 1994; Krabbe and Schulenberg 2003), including represen- (1954) placed Ramphocaenus in the Sylviidae while pro- tatives of the large genus Scytalopus, including one rep- visionally referring Psilorhamphus to the Formicariidae. resentative (indigoticus) of the ‘‘blue’’ species, which were ´ Then, Plotnick (1958) revealed that Psilorhamphus had a recently placed in a separate genus Eleoscytalopus four-notched sternum, a tracheophone syrinx, and had other ´ (Maurıcio et al. 2008). Three of the authors have significant characters, including an operculate nostril, indicating that it field experience of the biology and vocalizations of should be placed in the Rhinocryptidae. Thus, in Peters’ tapaculos, and this was supplemented with comments and Checklist Psilorhamphus appears as an addendum to the analyses of sound archives by Niels Krabbe (personal Rhinocryptidae that appeared in the volume on Sylviidae communication). Representatives of the main lineages (Paynter 1964). within the tracheophone radiation serve as outgroups Heimerdinger and Ames (1967) confirmed that the rhi- (Ridgely and Tudor 1994; Irestedt et al. 2002; Krabbe and nocryptids they examined all had a four-notched sternum Schulenberg 2003; Chesser 2004). but also showed that this condition obtained in at least two Three nuclear gene regions, myoglobin intron 2, orni- genera of grallarine Formicariidae, which was confirmed thine decarboxylase (ODC) introns 6 to 7, and glycer- by Feduccia and Olson (1982). aldehyde-3-phosphodehydrogenase (G3PDH) intron 11, Ames (1971) made a thorough study of the anatomy of were sequenced and used to estimate phylogenetic rela- the syrinx in passerine birds and examined Melanopareia tionships. For each gene and taxon, multiple sequence first-hand but had to rely on the description of Plotnick´ fragments were obtained by sequencing with different (1958) for Psilorhamphus. Although he noted that the primers. These sequences were assembled to complete cartilaginous elements of Melanopareia differed from sequences with SEQMAN II (DNASTAR). Positions where those of all other tapaculos examined, he found no grounds the nucleotide could not be determined with certainty were for excluding either Melanopareia or Psilorhamphus from coded with the appropriate IUPAC code. GenBank acces- the Rhinocryptidae. sion numbers are given in Table 1. See Irestedt et al. Feduccia and Olson (1982) made the much unexpected ˚ (2002); Allen and Omland (2003); and Fjeldsa et al. (2003) discovery that the stapes in Melanopareia was of the for extractions, amplifications, and sequencing procedures primitive oscine type with a flattened footplate, rather than for fresh tissue/blood samples. Corresponding laboratory having an expanded, bulbous, fenestrate footplate as in all procedures for study skins are detailed in Irestedt et al. other suboscine birds. They went on to show other mor- (2006). phological similarities (which is all they ever claimed they were) between some of the Rhinocryptidae and the oscine Phylogenetic inference and model selection Menurae (Menura and Atrichornis) of Australia. Although this observation was dismissed on the grounds that the Because of the rather low number of insertions in the characters involved are either primitive or convergent introns, the combined sequences could easily be aligned by (Krabbe and Schulenberg 2003), the fact remains that the eye. All gaps have been treated as missing data in the oscines and suboscines had to share a common ancestor analyses. Bayesian inference (Holder and Lewis 2003; and that the ancestor was very likely to have looked like Huelsenbeck et al. 2001) was used to estimate the phylo- Atrichornis, Melanopareia, or one of the Rhinocryptidae, genetic relationships. The models for nucleotide substitu- for example Scelorchilus. tions used in the analyses were selected for each gene This paper aims to delimit the boundaries of the tapac- individually by applying the Akaike information criterion ulos and assess generic relationships within the group, (AIC; Akaike 1973) and the software MrModeltest 2.2 supplementing the very detailed ongoing studies of rela- (Nylander 2005) in conjunction with PAUP* (Swofford tionships and speciation of small tapaculos (notably Scy- 1998). ´ talopus; Maurıcio et al. 2008, Cadena et al. unpublished) Posterior probabilities of trees and parameters in the by providing a broader phylogenetic framework for the substitution models were approximated with MCMC and family. Metropolis coupling using the software MrBayes 3.1.1 (Ronquist and Huelsenbeck 2003). Analyses were per- formed for both the individual gene partitions and the Materials and methods combined data set. In the analysis of the combined data set, the models selected for the individual gene partition were Taxon sampling, amplification and sequencing used. The chains for the individual gene partitions were run for five million generations while the chains for the com- This study includes representatives of all genera tradi- bined data set were run for ten million generations. Trees tionally recognized in Rhinocryptidae (Ridgely and Tudor were sampled every 100th generation, and the trees 123
  • 4. 340 J Ornithol (2010) 151:337–345 Table 1 Specimen data and GenBank accession numbers for samples used in the study Species Family: Subfamily Voucher/Sample No. Myoglobin G3PDH ODC Acropternis orthonyx Rhinocryptidae ZMUC 125695* GQ925894 GQ925879 GQ925860 Merulaxis ater Rhinocryptidae ZMUC 128820 GQ925895 GQ925880 GQ925861 Pteroptochos tarnii Rhinocryptidae AMNH RTC467* AY065774a AY590096e GQ925862 Rhinocrypta lanceolata Rhinocryptidae NRM 966793 AY065775a DQ438953f DQ435499f Teledromas fuscus Rhinocryptidae USNM BKS3703* GQ925896 GQ925881 GQ925863 Psilorhamphus guttatus Rhinocryptidae MHNT-4812 GQ925897 GQ925882 GQ925864 Myornis senilis Rhinocryptidae ZMUC 134967* GQ925898 GQ925883 GQ925865 Scytalopus parvirostris Rhinocryptidae ZMUC 128441 GQ925899 GQ925884 GQ925866 Scytalopus speluncae Rhinocryptidae ZMUC 128818 GQ925900 GQ925885 GQ925867 Scytalopus spillmannii Rhinocryptidae ZMUC 125091* AY065773a AY590097e GQ925868 Scytalopus zimmeri Rhinocryptidae ZMUC 126278* GQ925901 GQ925886 GQ925869 Scytalopus superciliaris Rhinocryptidae USNM BKS 3592* GQ925902 GQ925887 GQ925870 Eugralla paradoxa Rhinocryptidae NRM 570026*, TP GQ925903 GQ925888 GQ925871 Scelorchilus rubecula Rhinocryptidae NRM 570029*, TP GQ925904 GQ925889 GQ925872 Liosceles thoracicus Rhinocryptidae NRM 570027*, TP GQ925905 GQ925890 GQ925873 Eleoscytalopus indigoticus Rhinocryptidae NRM 570028*, TP GQ925906 GQ925891 GQ925874 Melanopareia maximiliani Rhinocryptidae ZMUC 125045* AY065785a GQ925892 GQ925875 Furnarius cristatus Furnariidae: Furnariinae NRM 966772* AY064255b AY590066e DQ435482f a e Philydor atricapillus Furnariidae: Furnariinae NRM 937334* AY065758 AY590076 EF212110h a e Synallaxis ruficapilla Furnariidae: Furnariinae NRM 956643* AY065763 AY590068 EF212119h a g Lepidocolaptes angoustirostris Furnariidae: Dendrocolaptinae NRM 937184* AY065767 AY336576 DQ435486f c e Dendrocincla tyrannina Furnariidae: Dendrocolaptinae ZMUC 125661* AY442959 AY590087 EF212098h a e Chamaeza meruloides Formicariidae ZMUC 126604* AY065776 AY590095 GQ140036i a Formicarius nigricapillus Formicariidae ZMUC 125987* AY065777 GQ925893 GQ925876 Grallaria squamigera Grallariidae ZMUC 124629* AY065778a AY677078c GQ140073i Dysithamnus mentalis Thamnophilidae NRM 956629* AY676995c AY677042c GQ925877 Terenura humeralis Thamnophilidae FMNH 389941 AY677004c AY677051c GQ925878 Thamnophilus caerulescens Thamnophilidae NRM 967007* AY065783a AY336587g DQ435504f a Conopophaga aurita Conopophagidae ZMUC 125796* AY065784 DQ435478f g Conopophaga lineata Conopophagidae NRM 956653* AY336577 Pipra fasciicauda Pipridae NRM 947271* AY065787a AY336583g DQ435495f a f Corythopsis delalandi Tyrannidae NRM 937282* AY065788 DQ435463 DQ435479f d f Elaenia flavogaster Tyrannidae NRM 966970* AY228295 DQ435464 DQ435480f Samples vouchered with a study skin are indicated by an asterisk. ‘‘TP’’ indicates that the sample is obtained from toe-pads of an old study skin. Acronyms are AMNH, American Museum of Natural History; FMNH, Field Museum of Natural History, Chicago, USA; MHNT, Museu de Historia Natural de ´ ´ Taubate, Sao Paulo, Brazil; NRM, Swedish Museum of Natural History; USNM, National Museum of Natural History, Washington, USA; ZMUC Zoological Museum, University of Copenhagen, Denmark a Irestedt et al. (2002) b Ericson et al. (2002) c Irestedt et al. (2004) d Ericson and Johansson (2003) e ˚ Fjeldsa et al. (2005) f Ericson et al. (2006) g ˚ Fjeldsa et al. (2003) h ˚ Fjeldsa et al. (2007) i Irestedt et al. (in press) sampled during the burn-in phase (i.e., before the chain had Sequence lengths and alignments reached its apparent target distribution) were then dis- carded after checking for convergence; final inference was We were able to sequence all three gene regions almost made from the concatenated outputs. completely for all included taxa (a few sequences miss 123
  • 5. J Ornithol (2010) 151:337–345 341 some base pairs in the 30 or 50 ends in the myoglobin or the contains Formicariidae sensu stricto and Furnariidae, in ODC regions, and in the ODC region all sequences agreement with previous molecular studies of tracheo- obtained from study skins lack a short fragment of 22 bp in phone suboscines (Irestedt et al. 2002; Chesser 2004). exon 7). Taking into account the missing base pairs, the Within the radiation of tapaculos there is also good sequences obtained varied in length between 667 and support for two major clades. Clade 1 includes Teledromas, 701 bp for the myoglobin intron 2, and between 313 and Acropternis, Rhinocrypta, Liosceles, and Psilorhamphus 363 bp for the G3PDH intron 11, except for the two ant- and Clade 2 includes Scytalopus, Eugralla, Myornis, thrushes Chamaeza and Formicarius which contain two Merulaxis, and Eleoscytalopus. The only conflict within large deletions in the G3PDH intron 11 which makes these the rhinocryptid radiation supported by posterior proba- sequences 251–252 bp long. In the ODC region all Rhi- bilities above 0.95 involves determining to which of the nocryptidae and Furnariidae taxa have a large deletion in previous two clades Pteroptochos and Scelorchilus belong. intron 7 and the sequences from these taxa range between In the ODC tree they group with Clade 1 (0.97), whereas 403 and 500 bp, while the sequences for all other taxa the myoglobin tree indicates that these two taxa are sister range between 586 and 624 bp. to Clade 2 (1.00). In the G3PDH tree this relationship is Most indels observed in the introns were autapomorphic unresolved. On the basis of the overall congruence of the and mainly found in certain variable regions. Some indels individual gene trees we believe that the tree obtained from vary in length between taxa, which makes it difficult to the combined analysis (Fig. 2) represents the best estimate know if these indels are homologous or represent inde- of the phylogenetic relationship of the tapaculos and in this pendent evolutionary events. Several apparently synapo- Pteroptochos and Scelorchilus fall out as sister to Clade 2. morphic indels were also observed when mapping the data This tree is fully congruent with the results of studies using on to the tree topology obtained from the Bayesian anal- other genetic markers, but with focus on detailed rela- yses of the combined data set. A few indels were also found ´ tionships within Clade 2 (Maurıcio et al. 2008 and Cadena to be incongruent with the phylogenetic tree obtained from et al. unpublished). analysis of the combined data set. These were generally found in the most variable regions and some of the single base pair insertions actually consist of different bases. Discussion Models for nucleotide substitutions Melanopareia resembles members of the Rhinocryptidae in having the lacrimal bones partly fused with the ectethmoid The prior selection of nucleotide substitution models sug- (but the lacrimals are lacking in Conopophagidae, Tham- gested that the GTR ? C model had the best fit for all three nophilidae, Grallaridae, and Formicariidae) and in having a gene regions, but as the nucleotide state frequencies and four-notched sternum. The significance of these characters gamma distribution differed between the partitions we is uncertain because of the weak cranial ossification in applied a partitioned analysis of the combined data set. these groups and substantial flexibility (including varying After discarding the burn-in phase the inferences for degrees of developmental asymmetry) in the degree of myoglobin and G3PDH were based on a total of 45,000 ossification of the membranes serving as attachment of samples from the posterior, the inferences for ODC were pectoral muscles (Heimerdinger and Ames 1967). The based on a total of 40,000 samples, and the inferences for molecular data are not suggestive of a close relationship of the combined data set were based on a total of 95,000 Melanopareia to the Rhinocryptidae. With four closely samples. The posterior distribution of topologies is pre- related extant species, Melanopareia is a long, unbroken sented as a majority-rule consensus tree from the combined phylogenetic branch, and it may be difficult to tell with analysis in Fig. 2. confidence whether this clade is nested within the Conop- ophagidae–Thamnophilidae complex or is a relictual, basal tracheophone type of bird. Results Irestedt et al. (2002) associated Teledromas with Mel- anopareia primarily because their vocalizations are con- The trees obtained from the Bayesian analyses of the fusingly similar, and Teledromas was considered to individual gene partitions (Fig. 3) are overall topologically resemble a robust and pale version of Melanopareia. Both congruent. Melanopareia clusters with Thamnophilidae genera are reported to share a peculiarity of the pterylog- and Conopophagidae and we can therefore reject it as a raphy of the flank region, and details of the nasal opercu- member of the family Rhinocryptidae with high confi- lum and tarsal scutellation, and an X-ray photo suggested dence. Apart from this, all traditional tapaculo genera form almost straight humeri (approaching those of Melano- a monophyletic clade within a broader group which also pareia; Irestedt et al. 2002). However, our DNA data and 123
  • 6. 342 J Ornithol (2010) 151:337–345 60 Acropternis orthonyx 94 Rhinocrypta lanceolata 100 Teledromas fuscus 100 Liosceles thoracicus Psilorhamphus guttatus 56 Scytalopus parvirostris Scytalopus spillmannii 100 100 100 Scytalopus superciliaris 98 Scytalopus zimmeri Scytalopus speluncae 100 Eugralla paradoxa 100 Myornis senilis 100 Merulaxis ater 100 Eleoscytalopus indigoticus 100 100 Pteroptochos tarnii Scelorchilus rubecula 100 Chamaeza meruloides Formicarius nigricapillus 100 Dendrocincla tyrannina 100 Lepidocolaptes angustirostri 100 100 Furnarius cristatus 100 Synallaxis ruficapilla 100 Philydor atricapillus Grallaria squamigera 55 Conopophaga aurita Melanopareia maximiliani 91 100 Dysithamnus mentalis 100 Thamnophilus caerulescens Terenura humeralis 99 Corythopsis delalandi Elaenia flavogaster Pipra fasciicauda Fig. 2 Majority rule consensus tree obtained from Bayesian analyses of the combined data set (myoglobin intron 2, ODC introns 6 and 7, and G3PDH intron 11). Posterior probability values are indicated at the node further examination of skeletal characters suggest rejection the pace and quality of the song notes of Psilorhamphus are of a closer relationship between them and places Tele- most like the songs of larger species of Pteroptochos, dromas centrally in Clade 1 of the Rhinocryptidae. which are even lower pitched (0.5–0.6 kHz). Interestingly, Psilorhamphus was placed with Polioptiline oscines Psilorhamphus shares with Liosceles barred posterior un- based on the acutiplantar tarsus, but a similar tarsal sca- derparts and distinctive whitish subterminal spots with a lation is also found in some antbirds, and osteology and black outline on the middle and greater wing-coverts. Apart syringeal morphology suggested placement with Rhino- from this, it is difficult to see any external features sup- cryptidae. We were able to confirm from examination of porting the suggested relationships within Clade 1. skeletal specimens that Psilorhamphus—and Teledro- The possible association of the large Chilean tapac- mas—have the expanded footplate of the stapes typical of ulos (Pteroptochos, Scelorchilus) with Clade 2 receives other suboscines (except Melanopareia). some morphological support, as Pteroptochos has 14 The distinctive appearance of Psilorhamphus may result rectrices, something that is also found in some species from its divergent habits (albeit shared with Myornis, or individuals of Scytalopus, although other representa- N. Krabbe personal communication), because it generally tives of this genus have a reduced number of rectrices or feeds by climbing in tangles of vine-like bamboo, occa- asymmetrical tails (Krabbe and Schulenberg 2003). sionally up to 7 m, and it rarely feeds on the ground. This Other suboscine birds typically have 12 rectrices, species is also known for its unbelievably loud and low- although there are many cases of reduction. Molecular pitched vocalizations (for its small size, 13.5 cm): a fast relationships within Pteroptochos have been analyzed by series of hollow whistles at 0.9–1 kHz. Its sister taxon in Chesser (1999). Fig. 2, Liosceles, also gives hollow whistles, but they are Within Clade 2, the Myornis–Eugralla–Scytalopus higher pitched (1.3 kHz) and are given at a slower pace; group is particularly well defined morphologically by small 123
  • 7. J Ornithol (2010) 151:337–345 343 Acropternis orthonyx A myoglobin 51 B ODC 65 Liosceles thoracicus 83 Teledromas fuscus Psilorhamphus guttatus 100 Rhinocrypta lanceolata Pteroptochos tarnii 100 100 Liosceles thoracicus Scelorchilus rubecula 97 Psilorhamphus guttatus Acropternis orthonyx 100 Scytalopus superciliaris Rhinocrypta lanceolata Scytalopus zimmeri Teledromas fuscus 100 100 Scytalopus parvirostris Scytalopus parvirostris 97 Scytalopus speluncae 100 Scytalopus spillmannii 95 Scytalopus spillmannii 100 97 Scytalopus superciliaris 100 Eugralla paradoxa Scytalopus zimmeri 88 100 Myornis senilis Scytalopus speluncae 96 Merulaxis ater Eugralla paradoxa 100 100 Scytalopus indigoticus 100 Myornis senilis 100 Pteroptochos tarnii Merulaxis ater 100 89 Scelorchilus rubecula Scytalopus indigoticus 100 Chamaeza meruloides Chamaeza meruloides 100 Formicarius nigricapillus Formicarius nigricapillus 100 Dendrocincla tyrannina Dendrocincla tyrannina 84 100 Lepidocolaptes angustirostri Lepidocolaptes angustirostri 100 84 Furnarius cristatus 100 100 Furnarius cristatus 100 Synallaxis ruficapilla Synallaxis ruficapilla 100 Philydor atricapillus Philydor atricapillus Grallaria squamigera Dysithamnus mentalis 100 100 60 Conopophaga aurita 100 Thamnophilus caerulescens Melanopareia maximiliani Terenura humeralis 94 Dysithamnus mentalis Conopophaga aurita 100 Thamnophilus caerulescens Grallaria squamigera Terenura humeralis Melanopareia maximiliani 96 Corythopsis delalandi 90 Corythopsis delalandi Elaenia flavogaster Elaenia flavogaster Pipra fasciicauda Pipra fasciicauda C G3PDH 89 Acropternis orthonyx 71 Rhinocrypta lanceolata 96 Teledromas fuscus 100 Liosceles thoracicus Psilorhamphus guttatus 62 Myornis senilis Scytalopus parvirostris Scytalopus speluncae 66 98 Scytalopus spillmannii 100 Scytalopus superciliaris 100 78 Scytalopus zimmeri Eugralla paradoxa 100 Merulaxis ater Scytalopus indigoticus 100 Pteroptochos tarnii Scelorchilus rubecula 80 Dysithamnus mentalis 80 100 Thamnophilus caerulescens Terenura humeralis 82 Conopophaga aurita Melanopareia maximiliani 61 Dendrocincla tyrannina 100 Lepidocolaptes angustirostri 100 80 Philydor atricapillus 96 99 Synallaxis ruficapilla Furnarius cristatus 93 Grallaria squamigera 100 Chamaeza meruloides Formicarius nigricapillus Elaenia flavogaster Pipra fasciicauda Corythopsis delalandi Fig. 3 The majority rule consensus trees obtained from the Bayesian analyses of the individual genes. a myoglobin intron 2; b ornithine decarboxylase introns 6 to 7; and c glyceraldehyde-3-phosphodehydrogenase intron 11. Posterior probability values are indicated at the node 123
  • 8. 344 J Ornithol (2010) 151:337–345 size and sooty-grey to blackish plumage and atrophied Acknowledgments Our thanks go especially to those researchers clavicles, which do not form a fused furcula (Maurıcio ´ who, for years, and often with very small economic means, have collected the specimens and tissue samples without which studies like et al. 2008). This may reflect reduced flying ability of these this could not be made. N. Krabbe is thanked for comments on the specialized birds, which tunnel through the densest parts of manuscript. E. Endrigo kindly provided the photograph of Psilor- the forest understorey. Myornis bears some resemblance to hamphus. The following institutions provided samples that have been Merulaxis, in shape and juvenile plumage (Krabbe and included in the study: Zoological Museum of Copenhagen University, Swedish Museum of Natural History, National Museum of Natural Schulenberg 2003), but our result does not support such an History, American Museum of Natural History and Field Museum of association. On the other hand, Myiornis and Eugralla Natural History. The Swedish Research Council provided financial clearly fall outside the group of species of Scytalopus that support for the laboratory work (grant no. 621–2007–5280 to PE). we studied (except with G3PDH) and we therefore support keeping them in separate monotypic genera. Under ‘‘Incertae Sedis’’, Irestedt et al. (2002) introduced References a family ‘‘Melanopareiidae (new family, incl. Melano- pareia and Teledromas)’’, which, however, was invalid Akaike H (1973) Information theory as an extension of the maximum likelihood principle. In: Petrov BN, Csaki F (eds) Second because it did not meet the requirements of the Interna- international symposium on information theory. Akademini tional Code of Zoological Nomenclature (ICZN 1999) in Kiado, Budapest, pp 267–281 lacking any description purporting to differentiate the Allen ES, Omland KE (2003) Novel intron phylogeny (ODC) taxon from other taxa. The need still remains for separate supports plumage convergence in orioles (Icterus). Auk 120: 961–969 family status for the genus, which we re-propose here: Ames PL (1971) The morphology of the syrinx in passerine birds. Melanopareiidae, new family Bull Peabody Mus Nat Hist 37:1–194 Chapman FL (1915) The more northern species of the genus Type and only included genus: Melanopareia Reichen- Scytalopus Gould. Auk 32:406–423 bach 1853. Chesser RT (1999) Molecular systematics of the rhinocryptid genus Diagnosis: Tracheophone suboscine passeriformes dif- Pteroptochus. 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